كلية الهندسة - جامعة عين شمس, الرئيسية

الرئيسية  >  كلية الهندسة - جامعة عين شمس, الرئيسية

Bioinformatics

What Will Learn?

  • Course Aims
    Understand a biological problem from a computational point of view. Formulate a computational solution to address a biological issue. Extract knowledge and collect statistics from large-scale biological data.
  • Course Goals
  • Decent Work and Economic Growth
  • Industry, Innovation and Infrastructure
  • Sustainable Cities and Communities

Requirements

CSE244

Description

  • English Description

    Introduction to bioinformatics. Fundamental molecular biology, Biological databases. Sequence analysis. Mathematical and algorithmic models of underlying bioinformatics. String distance and dynamic programming. Pairwise sequence alignment: Needleman-Wunsch, GLOBAL alignment, Local alignment, Smith-Waterman. Alignment scores: Constant, Linear, Affine gap, Gene prediction, Hidden Markov model. Multiple sequence alignment. Phylogenetic trees. DNA feature extractions. Microarray technology and analysis. Applications in molecular biology and genetics. Common bioinformatics tools.
  • Arabic Description

    Introduction to bioinformatics. Fundamental molecular biology, Biological databases. Sequence analysis. Mathematical and algorithmic models of underlying bioinformatics. String distance and dynamic programming. Pairwise sequence alignment: Needleman-Wunsch, GLOBAL alignment, Local alignment, Smith-Waterman. Alignment scores: Constant, Linear, Affine gap, Gene prediction, Hidden Markov model. Multiple sequence alignment. Phylogenetic trees. DNA feature extractions. Microarray technology and analysis. Applications in molecular biology and genetics. Common bioinformatics tools.
  • قسم
    هندسة الحاسبات والنظم
  • الساعات المعتمدة
    3
  • الدرجات
    الإجمالي ( 100 ) = نصف العام (25) + tr.Major Assessment (30 = tr.Industry 0% , tr.Project 15% , tr.Self_learning 5% , tr.Seminar 15% ) + tr.Minor Assessment (5) + درجة الامتحان (40)
  • الساعات
    ساعات المحاضرة: 2, ساعات التعليم: 2, ساعات المعمل: 0
  • Required SWL
    125
  • Equivalent ECTS
    5
  • - Mary K. Ritke, PhD, Essential Bioinformatics, Jin Xiong, Cambridge University Press; ISBN: 0-521-60082-0; 339 pp.; 2006;
  • - Ramsden, Jeremy. Bioinformatics: an introduction. Vol. 21. Springer, 2015.
  • - Sebastian Bassi. 2017. Python for Bioinformatics, Second Edition (2nd. ed.). Chapman & Hall/CRC. - Mary K. Ritke, PhD, Essential Bioinformatics, Jin Xiong, Cambridge University Press; ISBN: 0-521-60082-0; 339 pp.; 2006;.